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Learn Docking & Molecular Dynamics Simulation From Scratch

The Best Bioinformatics Course To Learn Advanced Bioinformatics Techniques, like Docking and Molecular Dynamics Simulations, like the best way.

What you’ll learn

Learn Docking & Molecular Dynamics Simulation From Scratch

  • You will learn the basics of Structural Bioinformatics, including how to predict the structure of proteins.
  • In this class, you will learn the basics of molecular dynamics simulations and docking.
  • You will learn about Linux operating systems and how to use their commands.
  • You will see a practical example of how GROMACS can be used to run simulations of protein molecular dynamics.
  • Analysis of MD Trajectories, like RMSD, RMSF, the radius of rotation, solvent accessible surface area, the total number of hydrogen bonds, and more will be taught.
  • You will see how to use AutoDock, Vina, CB-Dock, and PatchDock for Ligand Protein Docking in real life.
  • You will see a practical example of how GROMACS can be used to run MD simulations of a Ligand-Protein Complex.
  • Learn about how to do a virtual drug test (Theory and Practical).


  • In online teaching, it’s always hard to get the students to pay attention. So, we’ve made this course with the psychology of students in mind. That’s why we tried to move from simple to complex as quickly and easily as possible.
  • You need to know the basics of how proteins are made. This will be more than enough for you to start this course. You should be able to do that. In every module, we have tried our best to start from the beginning, assuming that our students don’t know anything about the subject.
  • Not everyone will have to take our course “Learn Bioinformatics From Scratch (Theory and Practical).”


There is a lot of use of bioinformatics tools in biological research right now. This Advanced Bioinformatics course will teach you both the theory and the practice of molecular docking and molecular dynamics simulation. We think that after taking this class, you will be very good at ligand-protein docking and molecular dynamics simulations. This is what we think.

We tried to make each step clear and beautiful. As in our previous course, “Learn Bioinformatics From Scratch (Theory & Practical),” we started from the beginning of this course, too, and we learned both theory and practical skills. You will be able to move with the flow if you are new to this field.

With 104 lectures each, there are seven modules and 104 lectures altogether. You’ll learn:

Protein Structural Bioinformatics is the first.

Molecular dynamics simulation: (2) the theory of how it works

In (3), we’ll talk about how to use Linux.

(4) Demonstration of Protein Molecular Dynamics Simulation in the real world.

This is number five: Ligand-Protein Docking (Theory & Practical).

Using Vina, Vina lets you do a virtual screening of ligands with proteins.

If you want to learn both theory and how to do things, this class is for you This course will make it easy for you to do molecular docking and molecular dynamics after you finish it, we promise! It doesn’t cost a lot of money to use open-source software in this class. They include Modeller and I-TASSER as well as Alpha Fold (Colab), Auto-dock4, Vina, Patch-Dock, GROMACS, LigPlot, and ChemSketch, as well as a lot more.

It’s time for you to do something. Then, click the “Enroll” button and start this wonderful journey. This course should be worth your money. We promise to help you in any way we can as you learn.

Who this course is for:

  • This class is for people who want to learn more about how drugs are made.
  • Even if you want to be a protein engineer and want to learn about new ways to make proteins, this class is for you!

Learn Docking & Molecular Dynamics Simulation From Scratch